adapterremoval3 3.0.0

Program #

Date	2026-04-12 18:00:30 CEST
Command	adapterremoval3 --in-file1 SRR651031_1.fastq.gz --in-file2 SRR651031_2.fastq.gz --out-prefix example --merge --min-complexity 0.3 --min-mean-quality 20 --threads 8
Version	3.0.0-9765e930
Runtime	21.4 seconds

Input #

	#Reads	#Bases	Read length	Q20	Q30	GC	N
Summary	49.4 M	4.45 G	90 bp	96.6 %	91.1 %	46.6 %	0.0 %
File 1	24.7 M	2.22 G	90 bp	97.3 %	92.0 %	46.7 %	0.0 %
File 2	24.7 M	2.22 G	90 bp	95.8 %	90.1 %	46.6 %	0.1 %

Base composition statistics/plots are based on 4.94 M (10.0 %) of input reads sampled during execution.

Output #

	#Reads	#Bases	Read length	Q20	Q30	GC	N
Passed*	37.4 M	3.87 G	103.5 bp	98.5 %	93.7 %	46.5 %	0.0 %
File 1	12.7 M	1.13 G	88.7 bp	98.6 %	93.4 %	46.9 %	0.0 %
File 2	12.7 M	1.11 G	87.6 bp	97.8 %	91.6 %	46.8 %	0.0 %
Merged	11.9 M	1.62 G	136.7 bp	98.9 %	95.4 %	46.1 %	0.0 %
Singleton	132 K	10.9 M	82.4 bp	95.3 %	85.3 %	46.9 %	0.0 %
Discarded*	134 K	1.70 M	12.7 bp	90.5 %	80.3 %	22.6 %	0.0 %

Base composition statistics/plots are based on 3.74 M (7.6 %) of output reads sampled during execution.

* The Passed column includes all read types except for Discarded reads.

Process summary #

Stage	Step		Reads	(%)	Bases	(%)	Mean Bases
Input	Raw reads	-	49.4 M	100.0 %	4.45 G	100.0 %	90.0 bp
Processing	Adapters	-	442 K	0.9 %	4.92 M	0.1 %	11.1 bp
	Merging	-	23.7 M	48.0 %	493 M	11.1 %	20.8 bp
	Low quality bases	-	3.33 M	6.7 %	73.7 M	1.7 %	22.1 bp
Filtering	Short reads	-	86.1 K	0.2 %	397 K	0.0 %	4.6 bp
	Ambiguous bases	-	190	0.0 %	7.03 K	0.0 %	37.0 bp
	Mean quality	-	1.25 K	0.0 %	49.0 K	0.0 %	39.1 bp
	Low complexity reads	-	46.4 K	0.1 %	1.25 M	0.0 %	26.9 bp
Output	Filtered reads	-	49.3 M	99.7 %	3.87 G	87.1 %	78.6 bp

3 of 7 processing steps enabled, 4 of 5 filtering steps enabled. Numbers of reads are given in terms of input reads, meaning that a merged read counts for two. For Processing and Filtering, the numbers of bases specify how many were lost during each step.

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Quality score distribution #

GC Content #

Insert-size distribution #

Position quality distribution #

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